Auto Analysis QC

You can configure BaseSpace Sequence Hub to automatically apply a QC status to analyses as they complete. BaseSpace Sequence Hub compares the analysis metrics to your predefined thresholds and assigns a dataset or a analysis status as QC Passed or QC Failed.

Automatic Analysis QC uses the BaseSpace Sequence Hub API. For more information, see the developer documentation at

When a dataset is set to QC failed, its data are excluded from downstream data analyses and total yield calculations.

Automatic Analysis QC uses Analysis Workflows and requires the following:

  • The app used in the Analysis Workflow must register analysis metrics.

  • The Analysis Workflow must be launched automatically. See Biosample Workflow.

  • The Analysis Workflow must contain metric thresholds. See Create an Analysis Workflow.

To view the analysis metrics, select Metrics from the analysis details page. For information about manually applying QC status, see Manual QC.

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