> For the complete documentation index, see [llms.txt](https://help.basespace.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.basespace.illumina.com/files-used-by-basespace.md).

# Files Used By Basespace

- [Biosample Workflow Files](https://help.basespace.illumina.com/files-used-by-basespace/biosample-workflow-files.md)
- [BAM Files](https://help.basespace.illumina.com/files-used-by-basespace/bam-files.md)
- [FastQ Files](https://help.basespace.illumina.com/files-used-by-basespace/fastq-files.md)
- [Quality Scores](https://help.basespace.illumina.com/files-used-by-basespace/quality-scores.md)
- [VCF Files](https://help.basespace.illumina.com/files-used-by-basespace/vcf-files.md)
- [gVCF Files](https://help.basespace.illumina.com/files-used-by-basespace/gvcf-files.md)