# BaseSpace Sequence Hub ## BaseSpace Sequence Hub - [Welcome](https://help.basespace.illumina.com/readme.md) - [What's New](https://help.basespace.illumina.com/overview/whats-new.md) - [FAQ](https://help.basespace.illumina.com/overview/faq.md) - [Technical Assistance](https://help.basespace.illumina.com/overview/technical-assistance.md) - [Release Notes](https://help.basespace.illumina.com/overview/latest-release.md) - [Data Model](https://help.basespace.illumina.com/overview/data-model.md) - [Account Types](https://help.basespace.illumina.com/overview/account-types.md) - [Professional Services](https://help.basespace.illumina.com/overview/professional-services.md) - [Data Automation Overview](https://help.basespace.illumina.com/automate/data-automation-overview.md) - [Automatic Data Flow](https://help.basespace.illumina.com/automate/automatic-data-flow.md) - [Automatic Data Aggregation](https://help.basespace.illumina.com/automate/automatic-data-aggregation.md) - [Unlock Biosamples](https://help.basespace.illumina.com/automate/automatic-data-aggregation/unlock-biosamples.md) - [Correct Aggregation](https://help.basespace.illumina.com/automate/automatic-data-aggregation/correct-unintended-aggregation.md) - [Request A Lab Requeue](https://help.basespace.illumina.com/automate/request-lab-requeue.md) - [Yield](https://help.basespace.illumina.com/automate/yield.md) - [Yield Examples](https://help.basespace.illumina.com/automate/yield-examples.md) - [Example 1](https://help.basespace.illumina.com/automate/yield-examples/yield-example-1.md) - [Example 2](https://help.basespace.illumina.com/automate/yield-examples/yield-example-2.md) - [Example 3](https://help.basespace.illumina.com/automate/yield-examples/yield-example-3.md) - [Automate Lane QC](https://help.basespace.illumina.com/automate/automate-lane-qc.md) - [Manual QC](https://help.basespace.illumina.com/automate/manual-qc.md) - [Statuses](https://help.basespace.illumina.com/automate/statuses.md) - [Import Demo Data](https://help.basespace.illumina.com/manage-data/import-demo-data.md) - [Delete Data](https://help.basespace.illumina.com/manage-data/delete-and-restore-data.md) - [Import Data Into Projects](https://help.basespace.illumina.com/manage-data/import-data.md) - [FastQ Upload Requirements](https://help.basespace.illumina.com/manage-data/import-data/fastq-upload-reqs.md) - [Download Data](https://help.basespace.illumina.com/manage-data/download.md) - [Download Individual Files](https://help.basespace.illumina.com/manage-data/download/download-files.md) - [Download Datasets](https://help.basespace.illumina.com/manage-data/download/download-datasets.md) - [Download Run Files](https://help.basespace.illumina.com/manage-data/download/download-run-files.md) - [Download Project Files](https://help.basespace.illumina.com/manage-data/download/download-project-files.md) - [Download Analysis Files](https://help.basespace.illumina.com/manage-data/download/download-analysis-files.md) - [Download Samples](https://help.basespace.illumina.com/manage-data/download/download-samples.md) - [Copy Datasets](https://help.basespace.illumina.com/manage-data/copy-datasets-to-proj.md) - [Transfer Ownership](https://help.basespace.illumina.com/manage-data/transfer-ownership.md) - [Archival Storage](https://help.basespace.illumina.com/manage-data/archival-storage.md) - [Automatic Data Deletion](https://help.basespace.illumina.com/manage-data/automatic-data-deletion.md) - [Sample Sheets](https://help.basespace.illumina.com/sequence/sample-sheets.md) - [Mapping Sequencing Runs to Biosamples](https://help.basespace.illumina.com/sequence/sample-sheets/ss-mapping-runs-to-bs.md) - [Fix Indexes](https://help.basespace.illumina.com/sequence/fix-indexes.md) - [Plan Runs](https://help.basespace.illumina.com/sequence/plan-runs.md) - [Plan a NextSeq 1000/2000 Run](https://help.basespace.illumina.com/sequence/plan-runs/set-up-planned-run.md) - [Set up NextSeq 1000/2000 Secondary Analysis](https://help.basespace.illumina.com/sequence/plan-runs/set-up-planned-run/plan-analysis.md) - [Custom Noise Baseline File](https://help.basespace.illumina.com/sequence/plan-runs/set-up-planned-run/custom-noise-baseline-file.md) - [Plan a NovaSeq X Series Run](https://help.basespace.illumina.com/sequence/plan-runs/multi-analysis-planned-run.md) - [Set up NovaSeq X Series Secondary Analysis](https://help.basespace.illumina.com/sequence/plan-runs/multi-analysis-planned-run/novaseqx-plan-analysis.md) - [NovaSeq X Series Custom Reference File](https://help.basespace.illumina.com/sequence/plan-runs/multi-analysis-planned-run/reference-files.md) - [Plan a MiSeq i100 Run](https://help.basespace.illumina.com/sequence/plan-runs/miseqi100-planned-run.md) - [Plan a Run via the API](https://help.basespace.illumina.com/sequence/plan-runs/run-planning-api.md) - [Create a Custom Index Adapter Kit](https://help.basespace.illumina.com/sequence/plan-runs/custom-index-adapter-kit.md) - [Import samples](https://help.basespace.illumina.com/sequence/plan-runs/import-samples.md) - [Requeue a Planned Run](https://help.basespace.illumina.com/sequence/plan-runs/requeue-planned-run.md) - [Analysis Configuration Template](https://help.basespace.illumina.com/sequence/plan-runs/analysis-configuration-template.md) - [Prep Tab](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab.md) - [Create Biological Samples](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/create-biosamples-prep-tab.md) - [Import Biological Samples](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/import-biosamples-prep-tab.md) - [Prep Libraries](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/prep-libraries-prep-tab.md) - [Import Sample Libraries](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/import-sample-libraries.md) - [Set Up a Custom Library Prep Kit](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/create-custom-prep-kit.md) - [Pool Libraries](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/pool-libraries-prep-tab.md) - [Plan Run Using Prep Tab](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/plan-run-prep-tab.md) - [Neo Prep](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/neo-prep.md) - [Configure](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/neo-prep/configure-neo-prep.md) - [Assign Wells](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/neo-prep/assign-wells-neo-prep.md) - [Review](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/neo-prep/review-neo-prep.md) - [Overview](https://help.basespace.illumina.com/microarray/overview.md) - [Manage Data](https://help.basespace.illumina.com/microarray/manage-data.md) - [Launch Analysis](https://help.basespace.illumina.com/microarray/launch-analysis.md) - [Plan Analysis](https://help.basespace.illumina.com/microarray/plan-analysis.md) - [Troubleshoot iScan Integration](https://help.basespace.illumina.com/microarray/troubleshoot-iscan.md) - [Analyze Data](https://help.basespace.illumina.com/analyze/analyze-data.md) - [Launching Apps](https://help.basespace.illumina.com/analyze/launching-apps.md) - [Analysis Workflows](https://help.basespace.illumina.com/analyze/analysis-workflows.md) - [Re-Launch Analysis](https://help.basespace.illumina.com/analyze/relaunch-analysis.md) - [Auto Analysis QC](https://help.basespace.illumina.com/analyze/automatic-analysis-qc.md) - [Basespace Apps](https://help.basespace.illumina.com/analyze/basespace-apps.md) - [Sharing Data](https://help.basespace.illumina.com/collaborate/sharing-data.md) - [Access Shared Data](https://help.basespace.illumina.com/collaborate/access-shared-data.md) - [Share with Collaborators](https://help.basespace.illumina.com/collaborate/share-with-collaborators.md) - [Share Analyses](https://help.basespace.illumina.com/collaborate/share-with-collaborators/share-analyses.md) - [Track Analysis Delivery Status](https://help.basespace.illumina.com/collaborate/share-with-collaborators/track-analysis-delivery-status.md) - [Share By Link](https://help.basespace.illumina.com/collaborate/share-with-collaborators/share-by-link.md) - [Share By Email](https://help.basespace.illumina.com/collaborate/share-with-collaborators/share-by-email.md) - [Manage Collaborator Access](https://help.basespace.illumina.com/collaborate/share-with-collaborators/manage-collaborator-access.md) - [Data Access After Share / Transfer](https://help.basespace.illumina.com/collaborate/share-with-collaborators/data-access-after-share-transfer.md) - [Workgroups](https://help.basespace.illumina.com/collaborate/workgroups.md) - [Manage Workgroups](https://help.basespace.illumina.com/collaborate/manage-workgroups.md) - [Access Workgroups](https://help.basespace.illumina.com/collaborate/manage-workgroups/access-workgroup.md) - [Create a Workgroup and Assign Admins](https://help.basespace.illumina.com/collaborate/manage-workgroups/create-workgrp-assign-admin.md) - [Rename a Workgroup](https://help.basespace.illumina.com/collaborate/manage-workgroups/rename-workgroup.md) - [Add Users to a Workgroup](https://help.basespace.illumina.com/collaborate/manage-workgroups/add-users-to-workgroup.md) - [Remove Users from a Workgroup](https://help.basespace.illumina.com/collaborate/manage-workgroups/remove-users-from-workgroup.md) - [Add Admins to a Workgroup](https://help.basespace.illumina.com/collaborate/manage-workgroups/add-admins-to-workgroup.md) - [Remove Admins from a Workgroup](https://help.basespace.illumina.com/collaborate/manage-workgroups/remove-admins-from-workgroup.md) - [Manage User Access](https://help.basespace.illumina.com/collaborate/manage-workgroups/manage-user-access.md) - [Change Password](https://help.basespace.illumina.com/manage-your-account/change-password.md) - [iCredits and Billing](https://help.basespace.illumina.com/manage-your-account/icredits-and-billing.md) - [Generate Usage Reports](https://help.basespace.illumina.com/manage-your-account/generate-usage-reports.md) - [Manage Enterprise Domains](https://help.basespace.illumina.com/manage-your-account/manage-enterprise-domain.md) - [Global Regions](https://help.basespace.illumina.com/manage-your-account/regions.md) - [Basespace API](https://help.basespace.illumina.com/developer-tools/basespace-api.md) - [Biosample Workflow Files](https://help.basespace.illumina.com/files-used-by-basespace/biosample-workflow-files.md) - [BAM Files](https://help.basespace.illumina.com/files-used-by-basespace/bam-files.md) - [FastQ Files](https://help.basespace.illumina.com/files-used-by-basespace/fastq-files.md) - [Quality Scores](https://help.basespace.illumina.com/files-used-by-basespace/quality-scores.md) - [VCF Files](https://help.basespace.illumina.com/files-used-by-basespace/vcf-files.md) - [gVCF Files](https://help.basespace.illumina.com/files-used-by-basespace/gvcf-files.md) - [View Data](https://help.basespace.illumina.com/data/view-data.md) - [View Runs](https://help.basespace.illumina.com/data/view-data/view-runs.md) - [View Run Summary](https://help.basespace.illumina.com/data/view-data/view-runs/run-summary.md) - [View Run Biosamples](https://help.basespace.illumina.com/data/view-data/view-runs/run-biosamples.md) - [View Run Samples](https://help.basespace.illumina.com/data/view-data/view-runs/run-samples.md) - [View Run Charts](https://help.basespace.illumina.com/data/view-data/view-runs/run-charts.md) - [View Run Metrics](https://help.basespace.illumina.com/data/view-data/view-runs/run-metrics.md) - [View Run Indexing QC](https://help.basespace.illumina.com/data/view-data/view-runs/indexing-qc.md) - [View Run Samplesheet](https://help.basespace.illumina.com/data/view-data/view-runs/run-samplesheet.md) - [View Run Files](https://help.basespace.illumina.com/data/view-data/view-runs/run-files.md) - [View Projects](https://help.basespace.illumina.com/data/view-data/view-projects.md) - [View Analyses](https://help.basespace.illumina.com/data/view-data/view-analyses.md) - [View Biosamples](https://help.basespace.illumina.com/data/view-data/view-biosamples.md) - [Create a Project](https://help.basespace.illumina.com/projects/create-project.md) - [Edit Project Details](https://help.basespace.illumina.com/projects/edit-project.md) - [Fix Sample Sheet](https://help.basespace.illumina.com/runs/fix-sample-sheet.md) - [Automated Run Zipping](https://help.basespace.illumina.com/runs/automated-run-zipping.md) - [Biosample Overview](https://help.basespace.illumina.com/biosamples/biosamples.md) - [Manage Biosamples](https://help.basespace.illumina.com/biosamples/manage-biosamples.md) - [Biosample Workflow](https://help.basespace.illumina.com/biosamples/biosample-workflow.md) - [Add Biosamples](https://help.basespace.illumina.com/biosamples/biosample-workflow/add-biosamples.md) - [Add Prep Requests](https://help.basespace.illumina.com/biosamples/biosample-workflow/add-prep-requests.md) - [Add Analysis Workflows to an Existing Biosample](https://help.basespace.illumina.com/biosamples/biosample-workflow/add-analysis-workflows-to-existing-biosamples.md) - [Schedule Multiple Analysis Workflows for a Biosample](https://help.basespace.illumina.com/biosamples/biosample-workflow/sched-mul-analysis-wrkflws-for-bs.md) - [Schedule Analysis Workflow - Multiple Biosamples](https://help.basespace.illumina.com/biosamples/biosample-workflow/sched-analysis-workfl-from-mul-bs.md) - [Associating Biosamples with Projects](https://help.basespace.illumina.com/biosamples/associating-bs-data-w-projs.md) - [Combine Samples](https://help.basespace.illumina.com/samples/combine-samples.md) - [Copy Samples](https://help.basespace.illumina.com/samples/copy-samples.md) - [Basespace CLI](https://help.basespace.illumina.com/cmd-line-interfaces/basespace-cli.md) - [Introduction to Basemount](https://help.basespace.illumina.com/cmd-line-interfaces/basespace-cli/introduction-to-basemount.md) - [Additional Resources](https://help.basespace.illumina.com/additional-resources/additional-resources.md) - [Security Model](https://help.basespace.illumina.com/additional-resources/additional-resources/security-model.md) - [Data Streaming](https://help.basespace.illumina.com/additional-resources/additional-resources/data-streaming.md) - [AWS](https://help.basespace.illumina.com/additional-resources/additional-resources/aws.md) - [Previous Releases](https://help.basespace.illumina.com/releases/previous-releases.md) - [2026](https://help.basespace.illumina.com/releases/previous-releases/2026.md) - [7.48.0 - BaseSpace Navigation Glow-Up Part 2](https://help.basespace.illumina.com/releases/previous-releases/2026/7.48.0.md) - [7.47.0 - BaseSpace Navigation Glow-Up](https://help.basespace.illumina.com/releases/previous-releases/2026/7.47.0.md) - [7.46.0 - Data Transfer Improvements](https://help.basespace.illumina.com/releases/previous-releases/2026/7.46.0.md) - [7.45.0 - Automated Workflow Error Messaging](https://help.basespace.illumina.com/releases/previous-releases/2026/7.45.0.md) - [7.44.0 - Interop Library Upgrades](https://help.basespace.illumina.com/releases/previous-releases/2026/7.44.0.md) - [7.43.0 - Copy And Merge All Samples](https://help.basespace.illumina.com/releases/previous-releases/2026/7.43.0.md) - [7.42.0 - BaseSpace CLI 1.7.0](https://help.basespace.illumina.com/releases/previous-releases/2026/7.42.0.md) - [2025](https://help.basespace.illumina.com/releases/previous-releases/2025.md) - [7.41.0 - Run Planning Improvements](https://help.basespace.illumina.com/releases/previous-releases/2025/7.41.0.md) - [7.40.0 - BaseSpace Downloader 3.1](https://help.basespace.illumina.com/releases/previous-releases/2025/7.40.0.md) - [7.39.0 - BaseSpace Downloader 3.0](https://help.basespace.illumina.com/releases/previous-releases/2025/7.39.0.md) - [7.38.0 - App Deprecations](https://help.basespace.illumina.com/releases/previous-releases/2025/7.38.0.md) - [7.37.0 - Analysis Details "Orchestrated Analyses" Section](https://help.basespace.illumina.com/releases/previous-releases/2025/7.37.0.md) - [7.36.0 - Analysis Size Display](https://help.basespace.illumina.com/releases/previous-releases/2025/7.36.0.md) - [7.35.0 - Display Cost for Completed ICA Analyses](https://help.basespace.illumina.com/releases/previous-releases/2025/7.35.0.md) - [7.34.0 - Deletion of Custom Reference Genomes](https://help.basespace.illumina.com/releases/previous-releases/2025/7.34.0.md) - [7.33.0 - Shared BCL Convert Section](https://help.basespace.illumina.com/releases/previous-releases/2025/7.33.0.md) - [7.32.0 - File Preview in Search](https://help.basespace.illumina.com/releases/previous-releases/2025/7.32.0.md) - [7.31.0 - Usage Explorer](https://help.basespace.illumina.com/releases/previous-releases/2025/7.31.0.md) - [7.30.0 - Prep Tab Deprecation](https://help.basespace.illumina.com/releases/previous-releases/2025/7.30.0.md) - [2024](https://help.basespace.illumina.com/releases/previous-releases/2024.md) - [7.29.0 - Improved Analysis Error Reporting](https://help.basespace.illumina.com/releases/previous-releases/2024/7.29.0.md) - [7.28.0 - MiSeq i100 Support](https://help.basespace.illumina.com/releases/previous-releases/2024/7.28.0.md) - [7.27.0 - App Store Upgrade](https://help.basespace.illumina.com/releases/previous-releases/2024/7.27.0.md) - [7.26.0 - Prep Tab Obsolescence Notification](https://help.basespace.illumina.com/releases/previous-releases/2024/7.26.0.md) - [7.25.0 - Project Column in the Analysis Files Tab](https://help.basespace.illumina.com/releases/previous-releases/2024/7.25.0.md) - [7.24.0 - Requeue Improvements](https://help.basespace.illumina.com/releases/previous-releases/2024/7.24.0.md) - [7.23.0 - BaseSpace CLI v1.6.0](https://help.basespace.illumina.com/releases/previous-releases/2024/7.23.0.md) - [7.22.0 - Analysis Autolaunch for NovaSeq X Manual Mode Runs](https://help.basespace.illumina.com/releases/previous-releases/2024/7.22.0.md) - [7.21.0 - Improved Look and Feel](https://help.basespace.illumina.com/releases/previous-releases/2024/7.21.0.md) - [7.20.0 - Analysis List Improvements](https://help.basespace.illumina.com/releases/previous-releases/2024/7.20.0.md) - [7.19.0 - Transfer of NovaSeq X Projects](https://help.basespace.illumina.com/releases/previous-releases/2024/7.19.0.md) - [7.18.0 - Custom Kit Deletion](https://help.basespace.illumina.com/releases/previous-releases/2024/7.18.0.md) - [2023](https://help.basespace.illumina.com/releases/previous-releases/2023.md) - [7.17.0 - Deletion of Biosample Default Projects](https://help.basespace.illumina.com/releases/previous-releases/2023/7.17.0.md) - [7.16.0 - Transfer of NovaSeq X Runs](https://help.basespace.illumina.com/releases/previous-releases/2023/7.16.0.md) - [7.15.0 - Compatibility Filtering in Run Planning](https://help.basespace.illumina.com/releases/previous-releases/2023/7.15.0.md) - [7.14.0 - Native App Engine Update](https://help.basespace.illumina.com/releases/previous-releases/2023/7.14.0.md) - [7.13.0 - Sharing for NovaSeq X Runs and Analyses](https://help.basespace.illumina.com/releases/previous-releases/2023/7.13.0.md) - [7.12.0 - Combined New and Classic Modes](https://help.basespace.illumina.com/releases/previous-releases/2023/7.12.0.md) - [7.11.0 - NovaSeq X Analysis Requeue](https://help.basespace.illumina.com/releases/previous-releases/2023/7.11.0.md) - [7.10.0 - NovaSeq X Analysis Autolaunch Improvements](https://help.basespace.illumina.com/releases/previous-releases/2023/7.10.0.md) - [7.9.0 - Multi-Analysis Run Planning](https://help.basespace.illumina.com/releases/previous-releases/2023/7.9.0.md) - [7.8.0 - Performance Improvements](https://help.basespace.illumina.com/releases/previous-releases/2023/7.8.0.md) - [2022](https://help.basespace.illumina.com/releases/previous-releases/2022.md) - [7.7.0 - NovaSeqX Support](https://help.basespace.illumina.com/releases/previous-releases/2022/7.7.0.md) - [7.6.0 - Custom Configuration Files in Microarray Analysis Setup](https://help.basespace.illumina.com/releases/previous-releases/2022/7.6.0.md) - [7.5.0 - Performance Enhancements](https://help.basespace.illumina.com/releases/previous-releases/2022/7.5.0.md) - [7.4.0 - Run Planning Enhancements](https://help.basespace.illumina.com/releases/previous-releases/2022/7.4.0.md) - [7.3.0 - Improve App Launch Performance](https://help.basespace.illumina.com/releases/previous-releases/2022/7.3.0.md) - [7.2.0 - FastQ Generation and other Bug Fixes](https://help.basespace.illumina.com/releases/previous-releases/2022/7.2.0.md) - [7.1.0 - FastQ Related Fixes and Performance Improvements](https://help.basespace.illumina.com/releases/previous-releases/2022/7.1.0.md) - [7.0.0 - Datasets and Apps Performance](https://help.basespace.illumina.com/releases/previous-releases/2022/7.0.0.md) - [6.19.0 - ICA Integration Enhancements](https://help.basespace.illumina.com/releases/previous-releases/2022/6.19.0.md) - [6.18.0 - ICA Integration with BCL Convert](https://help.basespace.illumina.com/releases/previous-releases/2022/6.18.0.md) - [6.17.0 - Preliminary ICA Integration](https://help.basespace.illumina.com/releases/previous-releases/2022/6.17.0.md) - [2021](https://help.basespace.illumina.com/releases/previous-releases/2021.md) - [6.16.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.16.0.md) - [6.15.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.15.0.md) - [6.14.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.14.0.md) - [6.13.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.13.0.md) - [6.12.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.12.0.md) - [6.11.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.11.0.md) - [6.10.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.10.0.md) - [6.9.0](https://help.basespace.illumina.com/releases/previous-releases/2021/6.9.0.md) - 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