> For the complete documentation index, see [llms.txt](https://help.basespace.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.basespace.illumina.com/manage-data/download/download-samples.md).

# Download Samples

Use the BaseSpace Sequence Hub Downloader to download whole samples or individual files from a specific sample.

### Download Samples

1. From a Run or Project, select the Samples tab.
2. Select the checkboxes for the desired sample or samples.
3. Select File, Download, then select Sample.
4. Select Download. The BaseSpace Sequence Hub Downloader guides you through the download process, and starts the download of the files to the desired location.

### Download Sample Files

1. From a Run or Project, select the Samples tab.
2. Click the name of the desired sample to access the sample details page.
3. In the Sample Files section, select the checkboxes of the file or files to download.
4. Select "Download Files".

The BaseSpace Sequence Hub Downloader guides you through the download process, and starts the download of the files to the desired location.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.basespace.illumina.com/manage-data/download/download-samples.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.