New to BaseSpace Sequence Hub?
Sequencing data has traditionally been stored in non-centralized locations, which offer little uniformity of data management across locations. BaseSpace Sequence Hub greatly simplifies access to sequencing data via data centralization and ease-of-use genetic data. Now sequencing labs can easily and securely analyze, archive, and share sequencing data.
Discover the possibilities
Planning a sequencing run with Prep tab
Create Samples
Create biological samples to be sequenced directly in Hub.
On the Prep Tab click the "Biological Samples" box.
Either create your own samples or import them
Fill the form to create a sample and click on the prep libraries tab
Prep Libraries
Prepare sample libraries for sequencing
Further Readings
On the Prep Tab click the "Libraries" box.
Either select existing libraries or import them
Import sample libraries in .csv format and click Pool Libraries button
Pool Libraries
Pool sample libraries on the plate.
Further Readings
On the Prep Tab click the "Pools" box.
Drag the samples from the plate to the 'Pools' section.
Plan Runs
Finish planning the run to be picked up by the sequencing instrument.
Further Readings
Enter the relevant information and the Run is ready to be sequenced.
Monitor your sequencing runs
Run Charts
Charts are updated in real-time as the machine sequences the data.
Further Readings
Runs chart
Flow chart
Data by cycle graph
Data by lane graph
Q-score heatmap graph
Q-score distribution graph
Run Summary
An overall summary of the Run quality information is available.
Further Readings
Runs summary chart
Analyze your data
Find an App
Discover applications in the BaseSpace Sequence Hub Apps tab.
Further Readings
Find the app to in the app store
Launch the app
To analyze your data, simply click Launch on an app.
Further Readings
Launch the chosen app from the app page
Enter Analysis input and parameters
Before the analysis is started, you will be asked to fill out some input parameters.
Further Readings
Enter the input parameters and continue to start the analysis
Monitor the analysis
Some applications will report information back to the user while running the analysis, this information can be viewed directly in BaseSpace Sequence Hub.
Further Readings
Monitor the analysis while it is in progress
Read Analysis report
Once the analysis is complete, the app will prepare a report for you in BaseSpace Sequence Hub with more information about the analysis and results.
Further Readings
Read the analysis report
Manage your data
Share with one or many users
Share data with individual users (AND) Share data with many users at once using the Link option.
Further Readings
Choose a desired project or run to share
Use either of the 'Share by email' or 'Share by Getlink' methods
Transfer ownership
Grant another user some or full ownership of any of your data.
Further Readings
Choose a desired project or run to share
Choose the 'Transfer Ownership' button.
Manage data in your account
Copy data to other locations in BaseSpace Sequence Hub (AND) Remove or delete data from your BaseSpace Sequence Hub account.
Choose the desired project to manage
You can Copy Samples
Move data to trash