Plan Runs

Plan a Run for NextSeq 2000 Using Instrument Run Setup

These instructions are for run setup on a NextSeq 2000. If you want to plan a run for NextSeq 500, NextSeq 550 or MiniSeq, use the Prep Tab Run Planning.
Use Instrument Run Setup in BaseSpace Sequence Hub to create and configure your run settings.
If your instrument is configured for Cloud mode or Hybrid mode, submit the run configuration to your BaseSpace Sequence Hub account. The run becomes available in the planned runs control software of the instrument.
If your instrument is configured for Local mode, use Instrument Run Setup to create your sample sheet in v2 file format. Alternatively, create a sample sheet without BaseSpace Sequence Hub using a provided template.
For instructions to complete the run, see the system guide for your instrument: NextSeq 2000 System Guide (document # 1000000109376)
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