> For the complete documentation index, see [llms.txt](https://help.basespace.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/neo-prep.md).

# Neo Prep

{% hint style="warning" %}
NeoPrep functionality has been deprecated and is no longer available.
{% endhint %}

## NeoPrep

#### Set Up a Library Prep Run for NeoPrep

The library prep run setup for NeoPrep includes the following three parts:

1. Create and configure the run.
2. Assign samples to wells.
3. Review the run setup.

At any point during this process, you can select the Save button to save your work. Saved runs appear on the NeoPrep Runs page with a status of Planning. When you are ready to resume work, select the run name.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.basespace.illumina.com/sequence/plan-runs/prep-tab/neo-prep.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
